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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.9

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-07-31, 11:40 based on data in: /tmp/tmpbsuve6dm

        General Statistics

        Showing 234/234 rows and 6/10 columns.
        Sample NameM Reads Mapped% AlignedInsert SizeMedian CoverageBases ≥ 20XBases ≥ 30X
        LKCGP-P000201-244412-01-06-01-R1
        120.0X
        98%
        98%
        LKCGP-P000201-244412-01-06-01-R1.H3NTMCCXY-L6
        938.6
        LKCGP-P000201-244412-01-06-01-R1.H3NTMCCXY-L7
        930.4
        LKCGP-P000201-244412-01-06-01-R1.H3NTMCCXY-L8
        984.1
        LKCGP-P000201-244413-01-06-07-G1
        976.6
        42.0X
        95%
        89%
        LKCGP-P000601-245664-01-06-01-D1
        108.0X
        97%
        97%
        LKCGP-P000601-245664-01-06-01-D1.H3LHGCCXY-L3
        918.9
        LKCGP-P000601-245664-01-06-01-D1.H3LHGCCXY-L4
        895.3
        LKCGP-P000601-245664-01-06-01-D1.H3LHGCCXY-L5
        922.8
        LKCGP-P000601-245666-02-06-07-G1
        920.6
        38.0X
        96%
        86%
        LKCGP-P000803-262693-01-02-09-G2
        934.8
        34.0X
        96%
        77%
        LKCGP-P000803-283756-01-02-03-R2
        103.0X
        98%
        98%
        LKCGP-P000803-283756-01-02-03-R2.HYNGWCCXY-L3
        914.8
        LKCGP-P000803-283756-01-02-03-R2.HYNGWCCXY-L4
        939.0
        LKCGP-P000803-283756-01-02-03-R2.HYNGWCCXY-L5
        924.3
        LKCGP-P000803-285371-01-02-03-G3
        776.0
        28.0X
        77%
        46%
        LKCGP-P000806-246359-02-04-07-G1
        963.2
        40.0X
        97%
        90%
        LKCGP-P000806-246360-01-04-01-D1
        105.0X
        98%
        97%
        LKCGP-P000806-246360-01-04-01-D1.H7JMJCCXY-L3
        951.8
        LKCGP-P000806-246360-01-04-01-D1.H7JMJCCXY-L4
        956.2
        LKCGP-P000806-246360-01-04-01-D1.H7JMJCCXY-L5
        948.4
        LKCGP-P000808-277069-01-02-01-G2
        900.7
        36.0X
        96%
        83%
        LKCGP-P000808-277070-01-02-03-R2
        108.0X
        98%
        97%
        LKCGP-P000808-277070-01-02-03-R2.HYGLNCCXY-L5
        925.7
        LKCGP-P000808-277070-01-02-03-R2.HYGLNCCXY-L6
        914.9
        LKCGP-P000808-277070-01-02-03-R2.HYGLNCCXY-L7
        907.3
        LKCGP-P000808-279684-01-02-08-G3
        939.8
        37.0X
        94%
        81%
        LKCGP-P001103-270604-01-02-03-R1
        104.0X
        98%
        98%
        LKCGP-P001103-271125-01-02-01-G2
        36.0X
        96%
        84%
        LKCGP-P001502-259175-02-01-07-G1
        928.0
        38.0X
        94%
        84%
        LKCGP-P001502-260042-01-01-01-R1
        103.0X
        98%
        98%
        LKCGP-P001502-260042-01-01-01-R1.HH355CCXY-L4
        939.1
        LKCGP-P001502-260042-01-01-01-R1.HH355CCXY-L5
        886.6
        LKCGP-P001502-260042-01-01-01-R1.HH355CCXY-L6
        863.1
        LKCGP-P001805-283771-01-01-01-D1
        111.0X
        98%
        98%
        LKCGP-P001805-283771-01-01-01-D1.H2VYCCCX2-L5
        899.2
        LKCGP-P001805-283771-01-01-01-D1.H2VYCCCX2-L6
        955.2
        LKCGP-P001805-283771-01-01-01-D1.H2VYCCCX2-L7
        881.9
        LKCGP-P001805-283773-02-01-07-G1
        934.7
        37.0X
        94%
        82%
        LKCGP-P001905-285206-01-02-05-R1
        113.0X
        98%
        98%
        LKCGP-P001905-285206-01-02-05-R1.HYNH2CCXY-L4
        951.7
        LKCGP-P001905-285206-01-02-05-R1.HYNH2CCXY-L6
        962.5
        LKCGP-P001905-285206-01-02-05-R1.HYNH2CCXY-L7
        953.2
        LKCGP-P001905-285611-01-02-03-G1
        926.5
        36.0X
        93%
        79%
        LKCGP-P002006-260310-01-02-01-G2
        747.9
        30.0X
        89%
        54%
        LKCGP-P002006-260311-01-02-05-R1
        97.0X
        98%
        98%
        LKCGP-P002006-260311-01-02-05-R1.HL2G5CCXY-L4
        813.6
        LKCGP-P002006-260311-01-02-05-R1.HL2GNCCXY-L5
        869.9
        LKCGP-P002006-260311-01-02-05-R1.HL2N2CCXY-L7
        753.2
        LKCGP-P002102-262924-01-04-01-D1
        105.0X
        98%
        97%
        LKCGP-P002102-262924-01-04-01-D1.HL225CCXY-L2
        861.9
        LKCGP-P002102-262924-01-04-01-D1.HL225CCXY-L3
        880.1
        LKCGP-P002102-262924-01-04-01-D1.HL225CCXY-L4
        864.6
        LKCGP-P002102-262981-02-04-07-G1
        846.1
        34.0X
        96%
        74%
        LKCGP-P002207-283109-01-03-01-R1
        101.0X
        98%
        97%
        LKCGP-P002207-283109-01-03-01-R1.H2VY3CCX2-L3
        894.3
        LKCGP-P002207-283109-01-03-01-R1.H2VY3CCX2-L4
        953.4
        LKCGP-P002207-283109-01-03-01-R1.H2VY3CCX2-L5
        892.5
        LKCGP-P002207-284471-02-03-07-G1
        901.4
        35.0X
        96%
        79%
        LKCGP-P002301-257587-01-04-01-D1
        95.0X
        98%
        98%
        LKCGP-P002301-257587-01-04-01-D1.HH57HCCXY-L5
        814.4
        LKCGP-P002301-257587-01-04-01-D1.HH57HCCXY-L6
        783.9
        LKCGP-P002301-257587-01-04-01-D1.HH57HCCXY-L7
        751.7
        LKCGP-P002301-257608-02-04-07-G1
        757.3
        30.0X
        89%
        54%
        LKCGP-P002307-284734-02-03-07-G1
        1005.5
        38.0X
        97%
        88%
        LKCGP-P002307-284737-01-03-01-R1
        105.0X
        98%
        97%
        LKCGP-P002307-284737-01-03-01-R1.H3G7MCCX2-L1
        990.6
        LKCGP-P002307-284737-01-03-01-R1.H3G7MCCX2-L2
        983.4
        LKCGP-P002307-284737-01-03-01-R1.H3G7MCCX2-L7
        989.7
        LKCGP-P002601-237394-01-04-07-G1
        976.3
        40.0X
        96%
        89%
        LKCGP-P002601-260323-01-04-01-P2
        89.0X
        97%
        97%
        LKCGP-P002601-260323-01-04-01-P2.HH3HWCCXY-L3
        733.4
        LKCGP-P002601-260323-01-04-01-P2.HH3HWCCXY-L4
        760.5
        LKCGP-P002601-260323-01-04-01-P2.HH3HWCCXY-L5
        729.4
        LKCGP-P002704-273227-02-04-07-G1
        934.6
        37.0X
        96%
        85%
        LKCGP-P002704-273230-01-04-01-R2
        111.0X
        98%
        97%
        LKCGP-P002704-273230-01-04-01-R2.HVY32CCXY-L6
        963.2
        LKCGP-P002704-273230-01-04-01-R2.HVY32CCXY-L7
        934.7
        LKCGP-P002704-273230-01-04-01-R2.HVY32CCXY-L8
        958.4
        LKCGP-P002805-297243-01-01-01-R1
        102.0X
        98%
        98%
        LKCGP-P002805-297243-01-01-01-R1.H5J2YCCX2-L6
        1016.1
        LKCGP-P002805-297243-01-01-01-R1.H5J2YCCX2-L7
        968.9
        LKCGP-P002805-297243-01-01-01-R1.H5J2YCCX2-L8
        968.8
        LKCGP-P002805-297245-02-01-07-G1
        999.4
        36.0X
        93%
        80%
        LKCGP-P002902-272974-01-02-03-G2
        879.7
        34.0X
        93%
        74%
        LKCGP-P002902-272975-01-02-03-G3
        859.4
        33.0X
        95%
        71%
        LKCGP-P002902-273015-01-02-03-P1
        103.0X
        98%
        98%
        LKCGP-P002902-273015-01-02-03-P1.HYGT7CCXY-L1
        861.6
        LKCGP-P002902-273015-01-02-03-P1.HYGT7CCXY-L2
        913.7
        LKCGP-P002902-273015-01-02-03-P1.HYGT7CCXY-L3
        856.9
        LKCGP-P003001-262014-02-03-07-G1
        775.9
        31.0X
        91%
        61%
        LKCGP-P003001-262058-01-03-01-P1
        86.0X
        98%
        97%
        LKCGP-P003001-262058-01-03-01-P1.HLL53CCXY-L5
        730.3
        LKCGP-P003001-262058-01-03-01-P1.HN7G7CCXY-L1
        759.6
        LKCGP-P003001-262058-01-03-01-P1.HN7G7CCXY-L2
        772.2
        LKCGP-P003307-294721-01-02-05-D1
        121.0X
        98%
        97%
        LKCGP-P003307-294721-01-02-05-D1.H5JLHCCX2-L2
        1006.3
        LKCGP-P003307-294721-01-02-05-D1.H5JLHCCX2-L3
        1007.1
        LKCGP-P003307-294721-01-02-05-D1.H5JLHCCX2-L4
        1021.0
        LKCGP-P003307-297693-01-02-12-G1
        994.4
        39.0X
        95%
        86%
        LKCGP-P003506-274439-01-02-05-G2
        920.9
        36.0X
        96%
        83%
        LKCGP-P003506-274440-01-02-05-G3
        952.9
        36.0X
        94%
        80%
        LKCGP-P003506-274441-01-02-05-R1
        109.0X
        98%
        97%
        LKCGP-P003506-274441-01-02-05-R1.HVY2TCCXY-L3
        906.5
        LKCGP-P003506-274441-01-02-05-R1.HVY2TCCXY-L4
        952.2
        LKCGP-P003506-274441-01-02-05-R1.HVY2TCCXY-L5
        939.2
        LKCGP-P003607-299930-01-01-01-R1
        114.0X
        98%
        97%
        LKCGP-P003607-299930-01-01-01-R1.H7CLLCCX2-L3
        1034.6
        LKCGP-P003607-299930-01-01-01-R1.H7CLLCCX2-L6
        1036.4
        LKCGP-P003607-299930-01-01-01-R1.H7CLLCCX2-L7
        957.2
        LKCGP-P003607-299932-02-01-07-G1
        1017.2
        38.0X
        97%
        87%
        LKCGP-P003804-277725-01-04-01-R1
        102.0X
        98%
        98%
        LKCGP-P003804-277725-01-04-01-R1.HYGNLCCXY-L6
        948.7
        LKCGP-P003804-277725-01-04-01-R1.HYGNLCCXY-L7
        930.1
        LKCGP-P003804-277725-01-04-01-R1.HYGNLCCXY-L8
        961.3
        LKCGP-P003804-277728-02-04-07-G1
        945.4
        37.0X
        94%
        81%
        LKCGP-P004301-270831-01-01-01-D1
        107.0X
        98%
        98%
        LKCGP-P004301-270831-01-01-01-D1.HVYJTCCXY-L5
        925.6
        LKCGP-P004301-270831-01-01-01-D1.HVYJTCCXY-L6
        923.8
        LKCGP-P004301-270831-01-01-01-D1.HVYJTCCXY-L7
        894.7
        LKCGP-P004301-270834-02-01-07-G1
        961.1
        36.0X
        94%
        81%
        LKCGP-P004801-275422-01-01-09-G1
        951.0
        38.0X
        94%
        83%
        LKCGP-P004801-275546-01-01-21-D1
        101.0X
        98%
        98%
        LKCGP-P004801-275546-01-01-21-D1.HW23TCCXY-L6
        878.8
        LKCGP-P004801-275546-01-01-21-D1.HW23TCCXY-L7
        934.3
        LKCGP-P004801-275546-01-01-21-D1.HW23TCCXY-L8
        826.0
        LKCGP-P005001-275776-01-03-01-R1
        99.0X
        98%
        97%
        LKCGP-P005001-275776-01-03-01-R1.HVWYTCCXY-L1
        904.2
        LKCGP-P005001-275776-01-03-01-R1.HVWYTCCXY-L2
        916.3
        LKCGP-P005001-275776-01-03-01-R1.HVWYTCCXY-L3
        918.3
        LKCGP-P005001-276091-02-03-07-G1
        926.6
        36.0X
        96%
        82%
        LKCGP-P005202-289115-01-04-01-P1
        105.0X
        98%
        98%
        LKCGP-P005202-289115-01-04-01-P1.H353NCCX2-L2
        914.0
        LKCGP-P005202-289115-01-04-01-P1.H353NCCX2-L4
        904.7
        LKCGP-P005202-289115-01-04-01-P1.H353NCCX2-L7
        970.8
        LKCGP-P005202-289117-02-04-07-G1
        928.1
        35.0X
        93%
        76%
        LKCGP-P005304-292439-02-04-07-G1
        969.9
        38.0X
        97%
        89%
        LKCGP-P005304-292442-01-04-01-R2
        111.0X
        98%
        97%
        LKCGP-P005304-292442-01-04-01-R2.H3G5KCCX2-L1
        962.5
        LKCGP-P005304-292442-01-04-01-R2.H3G5KCCX2-L2
        952.5
        LKCGP-P005304-292442-01-04-01-R2.H3G5KCCX2-L8
        990.1
        LKCGP-P005404-294240-02-06-13-P1
        92.0X
        98%
        97%
        LKCGP-P005404-294240-02-06-13-P1.H5NTWCCX2-L5
        890.9
        LKCGP-P005404-294240-02-06-13-P1.H5NTWCCX2-L6
        633.8
        LKCGP-P005404-294240-02-06-13-P1.H5NTWCCX2-L8
        950.2
        LKCGP-P005404-294497-02-06-07-G1
        937.1
        38.0X
        97%
        87%
        LKCGP-P005501-275617-05-02-08-G1
        907.8
        35.0X
        93%
        77%
        LKCGP-P005501-278087-01-02-01-D1
        91.0X
        98%
        98%
        LKCGP-P005501-278087-01-02-01-D1.HYKMGCCXY-L1
        883.3
        LKCGP-P005501-278087-01-02-01-D1.HYKMGCCXY-L2
        898.7
        LKCGP-P005501-278087-01-02-01-D1.HYKMGCCXY-L3
        910.2
        LKCGP-P005602-290690-01-01-01-R1
        113.0X
        98%
        97%
        LKCGP-P005602-290690-01-01-01-R1.H3G5KCCX2-L3
        969.3
        LKCGP-P005602-290690-01-01-01-R1.H3G5KCCX2-L4
        975.6
        LKCGP-P005602-290690-01-01-01-R1.H3G5KCCX2-L6
        981.4
        LKCGP-P005602-290694-02-01-01-G1
        983.2
        38.0X
        97%
        87%
        LKCGP-P005702-291453-02-04-07-G1
        937.8
        35.0X
        93%
        78%
        LKCGP-P005702-291574-01-04-01-D1
        92.0X
        98%
        98%
        LKCGP-P005702-291574-01-04-01-D1.H5HJVCCX2-L2
        839.8
        LKCGP-P005702-291574-01-04-01-D1.H5HJVCCX2-L4
        909.3
        LKCGP-P005702-291574-01-04-01-D1.H5HJVCCX2-L6
        974.4
        LKCGP-P005704-297004-01-04-01-R2
        105.0X
        98%
        97%
        LKCGP-P005704-297006-02-04-07-G1
        37.0X
        96%
        85%
        LKCGP-P005801-282911-01-01-01-D1
        100.0X
        98%
        97%
        LKCGP-P005801-282911-01-01-01-D1.H2VYCCCX2-L1
        889.1
        LKCGP-P005801-282911-01-01-01-D1.H2VYCCCX2-L2
        779.1
        LKCGP-P005801-282911-01-01-01-D1.H2VYCCCX2-L3
        878.2
        LKCGP-P005801-282913-02-01-07-G1
        962.1
        37.0X
        96%
        86%
        LKCGP-P005906-307371-01-04-01-D1
        93.0X
        98%
        97%
        LKCGP-P005906-307371-01-04-01-D1.H7N3CCCX2-L1
        939.7
        LKCGP-P005906-307371-01-04-01-D1.H7N3CCCX2-L2
        917.9
        LKCGP-P005906-307371-01-04-01-D1.H7N3CCCX2-L4
        934.6
        LKCGP-P005906-307590-02-04-07-G1
        877.2
        33.0X
        92%
        69%
        LKCGP-P006204-301991-02-06-07-G1
        1011.7
        38.0X
        97%
        87%
        LKCGP-P006204-301997-01-06-01-R2
        115.0X
        98%
        97%
        LKCGP-P006204-301997-01-06-01-R2.H7L5LCCX2-L5
        1021.1
        LKCGP-P006204-301997-01-06-01-R2.H7L5LCCX2-L7
        1017.0
        LKCGP-P006204-301997-01-06-01-R2.H7L5LCCX2-L8
        1011.9
        LKCGP-P006301-287949-01-04-01-P1
        98.0X
        98%
        98%
        LKCGP-P006301-287949-01-04-01-P1.H3M2GCCX2-L1
        954.1
        LKCGP-P006301-287949-01-04-01-P1.H3M2GCCX2-L2
        889.9
        LKCGP-P006301-287949-01-04-01-P1.H3M2GCCX2-L3
        957.3
        LKCGP-P006301-287951-02-04-07-G1
        946.1
        35.0X
        93%
        77%
        LKCGP-P006304-303188-01-01-01-G1
        882.9
        35.0X
        95%
        76%
        LKCGP-P006304-303189-01-01-01-D1
        103.0X
        98%
        97%
        LKCGP-P006304-303189-01-01-01-D1.H7YVYCCX2-L1
        913.2
        LKCGP-P006304-303189-01-01-01-D1.H7YVYCCX2-L4
        917.5
        LKCGP-P006304-303189-01-01-01-D1.H7YVYCCX2-L5
        920.9
        LKCGP-P006404-304450-02-02-07-G1
        894.7
        34.0X
        93%
        73%
        LKCGP-P006404-304454-01-02-01-R1
        100.0X
        98%
        98%
        LKCGP-P006404-304454-01-02-01-R1.H7N77CCX2-L5
        973.2
        LKCGP-P006404-304454-01-02-01-R1.H7N77CCX2-L6
        969.4
        LKCGP-P006404-304454-01-02-01-R1.H7N77CCX2-L8
        947.1
        LKCGP-P006501-288992-01-01-01-D1
        108.0X
        98%
        98%
        LKCGP-P006501-288992-01-01-01-D1.H33M5CCX2-L6
        985.5
        LKCGP-P006501-288992-01-01-01-D1.H33M5CCX2-L7
        971.4
        LKCGP-P006501-288992-01-01-01-D1.H33M5CCX2-L8
        937.5
        LKCGP-P006501-289018-02-01-07-G1
        954.3
        36.0X
        94%
        80%
        LKCGP-P006502-300356-02-03-03-G1
        931.8
        37.0X
        94%
        82%
        LKCGP-P006502-300779-01-03-01-P1
        106.0X
        98%
        98%
        LKCGP-P006502-300779-01-03-01-P1.H7N7YCCX2-L1
        939.8
        LKCGP-P006502-300779-01-03-01-P1.H7N7YCCX2-L5
        968.8
        LKCGP-P006502-300779-01-03-01-P1.H7N7YCCX2-L6
        971.4
        LKCGP-P006904-307586-02-01-07-G1
        918.8
        32.0X
        95%
        67%
        LKCGP-P006904-307596-01-01-01-D1
        103.0X
        98%
        97%
        LKCGP-P006904-307596-01-01-01-D1.H7NF7CCX2-L1
        936.5
        LKCGP-P006904-307596-01-01-01-D1.H7NF7CCX2-L2
        924.3
        LKCGP-P006904-307596-01-01-01-D1.H7NF7CCX2-L4
        927.4
        LKCGP-P007104-309549-01-02-05-G1
        930.2
        34.0X
        96%
        75%
        LKCGP-P007104-309550-01-02-05-R1
        107.0X
        98%
        97%
        LKCGP-P007104-309550-01-02-05-R1.HCHWGCCX2-L6
        929.5
        LKCGP-P007104-309550-01-02-05-R1.HCHWGCCX2-L7
        932.8
        LKCGP-P007104-309550-01-02-05-R1.HCHWGCCX2-L8
        929.1
        LKCP-T000101-030303-01-04-01-D1
        71.0X
        94%
        91%
        LKCP-T000101-030303-01-04-01-D1.HHGC7CCXX-L1
        861.0
        LKCP-T000101-030303-01-04-01-D1.HHGC7CCXX-L2
        893.5
        LKCP-T000101-030907-01-04-09-G1
        914.5
        37.0X
        87%
        73%
        LKCP-T000601-028528-01-01-01-R1
        75.0X
        91%
        89%
        LKCP-T000601-028528-01-01-01-R1.HHGC7CCXX-L4
        837.9
        LKCP-T000601-028528-01-01-01-R1.HHGC7CCXX-L5
        902.3
        LKCP-T000601-030378-01-01-07-G1
        962.9
        42.0X
        88%
        81%
        LKCP-T000801-030437-01-01-01-D1
        59.0X
        97%
        93%
        LKCP-T000801-030437-01-01-01-D1.HHT5TCCXX-L8
        693.3
        LKCP-T000801-030437-01-01-01-D1.HKJCTCCXX-L8
        873.8
        LKCP-T000801-030448-01-01-09-G1
        905.3
        37.0X
        86%
        72%
        LKCP-T000901-030488-01-05-09-G1
        853.9
        33.0X
        89%
        68%
        LKCP-T000901-030528-01-05-01-D1
        58.0X
        94%
        90%
        LKCP-T000901-030528-01-05-01-D1.HKJCTCCXX-L2
        832.3
        LKCP-T000901-030528-01-05-01-D1.HKJCTCCXX-L3
        843.8
        LKCP-T001101-030632-01-06-01-D1
        69.0X
        95%
        93%
        LKCP-T001101-030632-01-06-01-D1.HK7HLCCXX-L1
        937.9
        LKCP-T001101-030632-01-06-01-D1.HK7HLCCXX-L2
        929.8
        LKCP-T001101-030698-01-06-07-G1
        809.6
        28.0X
        82%
        43%
        P000806.D1vsG1
        99%
        386 bp

        Picard

        Picard is a set of Java command line tools for manipulating high-throughput sequencing data.

        Alignment Summary

        Please note that Picard's read counts are divided by two for paired-end data.

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        Base Distribution

        Plot shows the distribution of bases by cycle.

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        GC Coverage Bias

        This plot shows bias in coverage across regions of the genome with varying GC content. A perfect library would be a flat line at y = 1.

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        Insert Size

        Plot shows the number of reads at a given insert size. Reads with different orientations are summed.

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        WGS Coverage

        The number of bases in the genome territory for each fold coverage. Note that final 1% of data is hidden to prevent very long tails.

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        WGS Filtered Bases

        For more information about the filtered categories, see the Picard documentation.

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        Samtools

        Samtools is a suite of programs for interacting with high-throughput sequencing data.

        Samtools Flagstat

        This module parses the output from samtools flagstat. All numbers in millions.

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        XY counts

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Mapped reads per contig

        The samtools idxstats tool counts the number of mapped reads per chromosome / contig. Chromosomes with < 0.1% of the total aligned reads are omitted from this plot.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        MultiQC v1.9 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.